{
  "_id": "6a157553acfb0bcc41d65f4e",
  "Package": "Oncotree",
  "Type": "Package",
  "Title": "Estimating Oncogenetic Trees",
  "Version": "0.3.5",
  "Date": "2023-09-26",
  "Author": "Aniko Szabo, Lisa Pappas",
  "Maintainer": "Aniko Szabo <aszabo@mcw.edu>",
  "Description": "Construct and evaluate directed tree structures that model\nthe process of occurrence of genetic alterations during\ncarcinogenesis as described in Szabo, A. and Boucher, K (2002)\n<doi:10.1016/S0025-5564(02)00086-X>.",
  "License": "GPL (>=2)",
  "URL": "https://github.com/anikoszabo/Oncotree",
  "BugReports": "https://github.com/anikoszabo/Oncotree/issues",
  "Repository": "https://anikoszabo.r-universe.dev",
  "Date/Publication": "2023-09-28 13:31:05 UTC",
  "RemoteUrl": "https://github.com/anikoszabo/oncotree",
  "RemoteRef": "HEAD",
  "RemoteSha": "156fd9e2eb5d163b3c5062477cd8b1971d931df8",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-26 10:24:07 UTC",
    "User": "root"
  },
  "MD5sum": "2e50ed15703d3661b2685d7b296cd31e",
  "_user": "anikoszabo",
  "_type": "src",
  "_file": "Oncotree_0.3.5.tar.gz",
  "_fileid": "08b451944ec97edba8c5d78bc973b95012ec4b710f2b513b6376fd05a9b55adf",
  "_filesize": 587494,
  "_sha256": "08b451944ec97edba8c5d78bc973b95012ec4b710f2b513b6376fd05a9b55adf",
  "_created": "2026-05-26T10:24:07.000Z",
  "_published": "2026-05-26T10:26:27.801Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77854806037,
      "time": 103,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7214663111"
    },
    {
      "job": 77854806120,
      "time": 96,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7214661219"
    },
    {
      "job": 77854806019,
      "time": 71,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7214652567"
    },
    {
      "job": 77854806049,
      "time": 88,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7214658328"
    },
    {
      "job": 77854325188,
      "time": 180,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7214629142"
    },
    {
      "job": 77854806003,
      "time": 88,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7214658651"
    },
    {
      "job": 77854806075,
      "time": 94,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7214660374"
    },
    {
      "job": 77854806022,
      "time": 63,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7214650721"
    },
    {
      "job": 77854806094,
      "time": 70,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7214652727"
    }
  ],
  "_buildurl": "https://github.com/r-universe/anikoszabo/actions/runs/26446551336",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/anikoszabo/oncotree",
  "_commit": {
    "id": "156fd9e2eb5d163b3c5062477cd8b1971d931df8",
    "author": "anikoszabo <aszabo@mcw.edu>",
    "committer": "anikoszabo <aszabo@mcw.edu>",
    "message": "Submit 0.3.5 to CRAN\n\nMerge branch 'main' of https://github.com/anikoszabo/Oncotree\n\n# Conflicts:\n#\t.Rbuildignore\n",
    "time": 1695907865
  },
  "_maintainer": {
    "name": "Aniko Szabo",
    "email": "aszabo@mcw.edu",
    "login": "anikoszabo",
    "description": "",
    "uuid": 3868211
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.3.1",
      "role": "Depends"
    },
    {
      "package": "boot",
      "role": "Depends"
    },
    {
      "package": "lattice",
      "role": "Suggests"
    }
  ],
  "_owner": "anikoszabo",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "anikoszabo",
      "count": 8,
      "uuid": 3868211
    }
  ],
  "_userbio": {
    "uuid": 3868211,
    "type": "user",
    "name": "anikoszabo"
  },
  "_downloads": {
    "count": 245,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/Oncotree"
  },
  "_mentions": 5,
  "_devurl": "https://github.com/anikoszabo/oncotree",
  "_searchresults": 20,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/Oncotree.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/anikoszabo/oncotree",
  "_realowner": "anikoszabo",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.3",
      "date": "2009-03-12"
    },
    {
      "version": "0.3.1",
      "date": "2012-10-29"
    },
    {
      "version": "0.3.2",
      "date": "2012-11-13"
    },
    {
      "version": "0.3.3",
      "date": "2013-12-12"
    },
    {
      "version": "0.3.4",
      "date": "2022-04-11"
    },
    {
      "version": "0.3.5",
      "date": "2023-09-28"
    }
  ],
  "_exports": [
    "ancestors",
    "bootstrap.oncotree",
    "distribution.oncotree",
    "error.rates<-",
    "generate.data",
    "least.common.ancestor",
    "marginal.distr",
    "oncotree.fit",
    "plot.boottree",
    "plot.oncotree",
    "print.boottree",
    "print.oncotree",
    "pstree.oncotree"
  ],
  "_datasets": [
    {
      "name": "ov.cgh",
      "title": "Ovarian cancer CGH data",
      "object": "ov.cgh",
      "file": "ov.cgh.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "8q+",
        "3q+",
        "5q-",
        "4q-",
        "8p-",
        "1q+",
        "Xp-"
      ],
      "rows": 87,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "Oncotree-package",
      "title": "Constructing and evaluating oncogenetic trees",
      "topics": [
        "Oncotree-package",
        "Oncotree"
      ]
    },
    {
      "page": "ancestors",
      "title": "Find ancestors within an oncogenetic tree.",
      "topics": [
        "ancestors",
        "least.common.ancestor"
      ]
    },
    {
      "page": "bootstrap.oncotree",
      "title": "Bootstrap an oncogenetic tree to assess stability",
      "topics": [
        "bootstrap.oncotree",
        "plot.boottree",
        "print.boottree"
      ]
    },
    {
      "page": "distribution.oncotree",
      "title": "Find the event distribution defined by an oncogenetic tree",
      "topics": [
        "distribution.oncotree",
        "marginal.distr"
      ]
    },
    {
      "page": "error.rates_-",
      "title": "Set the error rates of an oncotree manually",
      "topics": [
        "error.rates<-"
      ]
    },
    {
      "page": "generate.data",
      "title": "Generate random data from an oncogenetic tree",
      "topics": [
        "generate.data"
      ]
    },
    {
      "page": "oncotree.fit",
      "title": "Build and display an oncogenetic tree",
      "topics": [
        "oncotree.fit",
        "plot.oncotree",
        "print.oncotree",
        "pstree.oncotree"
      ]
    },
    {
      "page": "ov.cgh",
      "title": "Ovarian cancer CGH data",
      "topics": [
        "ov.cgh"
      ]
    }
  ],
  "_rundeps": [
    "boot"
  ],
  "_vignettes": [
    {
      "source": "Oncotree_intro.Rnw",
      "filename": "Oncotree_intro.pdf",
      "title": "OncotreeIntro",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2023-09-26 21:16:11",
      "modified": "2023-09-26 21:16:11",
      "commits": 1
    },
    {
      "source": "Oncotree_vignette.Rnw",
      "filename": "Oncotree_vignette.pdf",
      "title": "Using Oncotree for the ovarian cancer CGH data",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2023-09-26 21:16:11",
      "modified": "2023-09-28 13:27:15",
      "commits": 2
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "oncotree",
  "_universes": [
    "anikoszabo"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3.5",
      "date": "2026-05-26T10:25:55.000Z",
      "distro": "noble",
      "commit": "156fd9e2eb5d163b3c5062477cd8b1971d931df8",
      "fileid": "a5871ca6939a63a1fa6265f85933137f68d848090f9abc6acbce3df51c0db73c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/anikoszabo/actions/runs/26446551336"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.3.5",
      "date": "2026-05-26T10:25:51.000Z",
      "distro": "noble",
      "commit": "156fd9e2eb5d163b3c5062477cd8b1971d931df8",
      "fileid": "e31bd1798d3cedb02efd3e18298af2a16a453528567ebac48c26ce3330317eca",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/anikoszabo/actions/runs/26446551336"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.3.5",
      "date": "2026-05-26T10:25:28.000Z",
      "commit": "156fd9e2eb5d163b3c5062477cd8b1971d931df8",
      "fileid": "70881a478c2d65f184ad4a9505342c118ce7ed99d2b48fa947322f1273a11a1c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/anikoszabo/actions/runs/26446551336"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.3.5",
      "date": "2026-05-26T10:25:44.000Z",
      "commit": "156fd9e2eb5d163b3c5062477cd8b1971d931df8",
      "fileid": "ecbcae7cae84471febe3b1c66fd2b7a46c39623c704cf6e8a61376f29c5d03ca",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/anikoszabo/actions/runs/26446551336"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3.5",
      "date": "2026-05-26T10:25:54.000Z",
      "commit": "156fd9e2eb5d163b3c5062477cd8b1971d931df8",
      "fileid": "c56c172d684bf98f44612d1dbdf3cdcc63f3de03d66411f16de7d1424affdd47",
      "status": "success",
      "buildurl": "https://github.com/r-universe/anikoszabo/actions/runs/26446551336"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.3.5",
      "date": "2026-05-26T10:25:42.000Z",
      "commit": "156fd9e2eb5d163b3c5062477cd8b1971d931df8",
      "fileid": "50a56225d1a5ef3984cb5daf753f61409aa2475838ce2a73e93a4778f73c381d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/anikoszabo/actions/runs/26446551336"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.3.5",
      "date": "2026-05-26T10:25:13.000Z",
      "commit": "156fd9e2eb5d163b3c5062477cd8b1971d931df8",
      "fileid": "89155ec0d72a6a3250a4b22b20dde717271e0f0ea127f6f4f95bb72aa5ac6fbb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/anikoszabo/actions/runs/26446551336"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.3.5",
      "date": "2026-05-26T10:25:18.000Z",
      "commit": "156fd9e2eb5d163b3c5062477cd8b1971d931df8",
      "fileid": "a6192c8c584ffb4c40404b4e4988b20b3f267ff3b311c5b0b3bcae4868f3c348",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/anikoszabo/actions/runs/26446551336"
    }
  ]
}