Package: CorrBin 1.6.2

CorrBin: Nonparametrics with Clustered Binary and Multinomial Data

Implements non-parametric analyses for clustered binary and multinomial data. The elements of the cluster are assumed exchangeable, and identical joint distribution (also known as marginal compatibility, or reproducibility) is assumed for clusters of different sizes. A trend test based on stochastic ordering is implemented. Szabo A, George EO. (2010) <doi:10.1093/biomet/asp077>; George EO, Cheon K, Yuan Y, Szabo A (2016) <doi:10.1093/biomet/asw009>.

Authors:Aniko Szabo [aut, cre, cph]

CorrBin_1.6.2.tar.gz
CorrBin_1.6.2.zip(r-4.7)CorrBin_1.6.2.zip(r-4.6)CorrBin_1.6.2.zip(r-4.5)
CorrBin_1.6.2.tgz(r-4.6-x86_64)CorrBin_1.6.2.tgz(r-4.6-arm64)CorrBin_1.6.2.tgz(r-4.5-x86_64)CorrBin_1.6.2.tgz(r-4.5-arm64)
CorrBin_1.6.2.tar.gz(r-4.7-arm64)CorrBin_1.6.2.tar.gz(r-4.7-x86_64)CorrBin_1.6.2.tar.gz(r-4.6-arm64)CorrBin_1.6.2.tar.gz(r-4.6-x86_64)
CorrBin_1.6.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CorrBin/json (API)

# Install 'CorrBin' in R:

install.packages('CorrBin', repos = c('https://anikoszabo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/anikoszabo/corrbin/issues

Datasets:

dehp - Developmental toxicology study of DEHP in mice
egde - EGDE data
shelltox - Shell Toxicology data

On CRAN:

3.54 score 35 scripts 286 downloads 26 exports 4 dependencies

Last updated from:60d2fe7a85. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	129
linux-devel-x86_64	OK	132
source / vignettes	OK	179
linux-release-arm64	OK	624
linux-release-x86_64	OK	158
macos-release-arm64	OK	139
macos-release-x86_64	OK	345
macos-oldrel-arm64	OK	240
macos-oldrel-x86_64	OK	301
windows-devel	OK	242
windows-release	OK	78
windows-oldrel	OK	85
wasm-release	OK	111

Exports:betabin.pdf CBData CMData GEE.trend.test jointprobs mc.est mc.test.chisq mg.DirMult mg.LogitNorm mg.MixMult mg.Resample multi.corr NOSTASOT qpower.pdf ran.CBData ran.CMData read.CBData read.CMData RS.trend.test SO.LRT SO.mc.est SO.trend.test soControl trend.test uniprobs unwrap

Dependencies:boot combinat dirmult mvtnorm

Using CorrBin for the Shell Toxicology data

Rendered fromCorrBinVignette.Rnwusingutils::Sweave

Last update: 2023-09-28
Started: 2023-09-28

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Nonparametrics for Correlated Binary and Multinomial Data	CorrBin-package CorrBin
Create a `CBdata' object from a data frame.	CBData
Create a `CMdata' object from a data frame.	CMData
Developmental toxicology study of DEHP in mice	dehp
EGDE data	egde
Extract from a CBData or CMData object	Extract [.CBData [.CMData
GEE-based trend test	GEE.trend.test
Estimate joint event probabilities for multinomial data	jointprobs
Distribution of the number of responses assuming marginal compatibility.	mc.est mc.est.CBData mc.est.CMData
Test the assumption of marginal compatibility	mc.test.chisq mc.test.chisq.CBData mc.test.chisq.CMData
Extract correlation coefficients from joint probability arrays	multi.corr
Functions for generating multinomial outcomes	mg.DirMult mg.LogitNorm mg.MixMult mg.Resample multinom.gen
Finding the NOSTASOT dose	NOSTASOT
Parametric distributions for correlated binary data	betabin.pdf pdf qpower.pdf
Generate random correlated binary data	ran.CBData
Generate a random CMData object	ran.CMData
Read data from external file into a CBData object	read.CBData
Read data from external file into a CMData object	read.CMData
Rao-Scott trend test	RS.trend.test
Shell Toxicology data	shelltox
Likelihood-ratio test statistic	SO.LRT
Order-restricted MLE assuming marginal compatibility	SO.mc.est
Likelihood ratio test of stochastic ordering	SO.trend.test
Control values for order-constrained fit	soControl
Test for increasing trend with correlated binary data	trend.test
Extract univariate marginal probabilities from joint probability arrays	uniprobs
Unwrap a clustered object	unwrap unwrap.CBData unwrap.CMData