Package: CorrBin 1.6.2

CorrBin: Nonparametrics with Clustered Binary and Multinomial Data

Implements non-parametric analyses for clustered binary and multinomial data. The elements of the cluster are assumed exchangeable, and identical joint distribution (also known as marginal compatibility, or reproducibility) is assumed for clusters of different sizes. A trend test based on stochastic ordering is implemented. Szabo A, George EO. (2010) <doi:10.1093/biomet/asp077>; George EO, Cheon K, Yuan Y, Szabo A (2016) <doi:10.1093/biomet/asw009>.

Authors:Aniko Szabo [aut, cre, cph]

CorrBin_1.6.2.tar.gz
CorrBin_1.6.2.zip(r-4.5)CorrBin_1.6.2.zip(r-4.4)CorrBin_1.6.2.zip(r-4.3)
CorrBin_1.6.2.tgz(r-4.4-x86_64)CorrBin_1.6.2.tgz(r-4.4-arm64)CorrBin_1.6.2.tgz(r-4.3-x86_64)CorrBin_1.6.2.tgz(r-4.3-arm64)
CorrBin_1.6.2.tar.gz(r-4.5-noble)CorrBin_1.6.2.tar.gz(r-4.4-noble)
CorrBin_1.6.2.tgz(r-4.4-emscripten)CorrBin_1.6.2.tgz(r-4.3-emscripten)
CorrBin.pdf |CorrBin.html
CorrBin/json (API)

# Install 'CorrBin' in R:
install.packages('CorrBin', repos = c('https://anikoszabo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/anikoszabo/corrbin/issues

Datasets:
  • dehp - Developmental toxicology study of DEHP in mice
  • egde - EGDE data
  • shelltox - Shell Toxicology data

On CRAN:

3.45 score 28 scripts 251 downloads 26 exports 4 dependencies

Last updated 3 months agofrom:60d2fe7a85. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 29 2024
R-4.5-win-x86_64OKOct 29 2024
R-4.5-linux-x86_64OKOct 29 2024
R-4.4-win-x86_64OKOct 29 2024
R-4.4-mac-x86_64OKOct 29 2024
R-4.4-mac-aarch64OKOct 29 2024
R-4.3-win-x86_64OKOct 29 2024
R-4.3-mac-x86_64OKOct 29 2024
R-4.3-mac-aarch64OKOct 29 2024

Exports:betabin.pdfCBDataCMDataGEE.trend.testjointprobsmc.estmc.test.chisqmg.DirMultmg.LogitNormmg.MixMultmg.Resamplemulti.corrNOSTASOTqpower.pdfran.CBDataran.CMDataread.CBDataread.CMDataRS.trend.testSO.LRTSO.mc.estSO.trend.testsoControltrend.testuniprobsunwrap

Dependencies:bootcombinatdirmultmvtnorm

Using CorrBin for the Shell Toxicology data

Rendered fromCorrBinVignette.Rnwusingutils::Sweaveon Oct 29 2024.

Last update: 2023-09-28
Started: 2023-09-28

Readme and manuals

Help Manual

Help pageTopics
Nonparametrics for Correlated Binary and Multinomial DataCorrBin-package CorrBin
Create a `CBdata' object from a data frame.CBData
Create a `CMdata' object from a data frame.CMData
Developmental toxicology study of DEHP in micedehp
EGDE dataegde
Extract from a CBData or CMData objectExtract [.CBData [.CMData
GEE-based trend testGEE.trend.test
Estimate joint event probabilities for multinomial datajointprobs
Distribution of the number of responses assuming marginal compatibility.mc.est mc.est.CBData mc.est.CMData
Test the assumption of marginal compatibilitymc.test.chisq mc.test.chisq.CBData mc.test.chisq.CMData
Extract correlation coefficients from joint probability arraysmulti.corr
Functions for generating multinomial outcomesmg.DirMult mg.LogitNorm mg.MixMult mg.Resample multinom.gen
Finding the NOSTASOT doseNOSTASOT
Parametric distributions for correlated binary databetabin.pdf pdf qpower.pdf
Generate random correlated binary dataran.CBData
Generate a random CMData objectran.CMData
Read data from external file into a CBData objectread.CBData
Read data from external file into a CMData objectread.CMData
Rao-Scott trend testRS.trend.test
Shell Toxicology datashelltox
Likelihood-ratio test statisticSO.LRT
Order-restricted MLE assuming marginal compatibilitySO.mc.est
Likelihood ratio test of stochastic orderingSO.trend.test
Control values for order-constrained fitsoControl
Test for increasing trend with correlated binary datatrend.test
Extract univariate marginal probabilities from joint probability arraysuniprobs
Unwrap a clustered objectunwrap unwrap.CBData unwrap.CMData