Oncotree - Estimating Oncogenetic Trees
Construct and evaluate directed tree structures that model the process of occurrence of genetic alterations during carcinogenesis as described in Szabo, A. and Boucher, K (2002) <doi:10.1016/S0025-5564(02)00086-X>.
Last updated 1 years ago
4.28 score 19 scripts 264 downloadsCorrBin - Nonparametrics with Clustered Binary and Multinomial Data
Implements non-parametric analyses for clustered binary and multinomial data. The elements of the cluster are assumed exchangeable, and identical joint distribution (also known as marginal compatibility, or reproducibility) is assumed for clusters of different sizes. A trend test based on stochastic ordering is implemented. Szabo A, George EO. (2010) <doi:10.1093/biomet/asp077>; George EO, Cheon K, Yuan Y, Szabo A (2016) <doi:10.1093/biomet/asw009>.
Last updated 7 months ago
3.45 score 28 scripts 303 downloadsmultiCA - Multinomial Cochran-Armitage Trend Test
Implements a generalization of the Cochran-Armitage trend test to multinomial data. In addition to an overall test, multiple testing adjusted p-values for trend in individual outcomes and power calculation is available.
Last updated 3 years ago
2.48 score 1 dependents 6 scripts 213 downloads