R-universe - anikoszabo (anikoszabo)

Oncotree - Estimating Oncogenetic Trees

Construct and evaluate directed tree structures that model the process of occurrence of genetic alterations during carcinogenesis as described in Szabo, A. and Boucher, K (2002) <doi:10.1016/S0025-5564(02)00086-X>.

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4.34 score 22 scripts 277 downloads

CorrBin - Nonparametrics with Clustered Binary and Multinomial Data

Implements non-parametric analyses for clustered binary and multinomial data. The elements of the cluster are assumed exchangeable, and identical joint distribution (also known as marginal compatibility, or reproducibility) is assumed for clusters of different sizes. A trend test based on stochastic ordering is implemented. Szabo A, George EO. (2010) <doi:10.1093/biomet/asp077>; George EO, Cheon K, Yuan Y, Szabo A (2016) <doi:10.1093/biomet/asw009>.

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3.54 score 35 scripts 323 downloads

multiCA - Multinomial Cochran-Armitage Trend Test

Implements a generalization of the Cochran-Armitage trend test to multinomial data. In addition to an overall test, multiple testing adjusted p-values for trend in individual outcomes and power calculation is available.

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2.62 score 1 stars 1 dependents 14 scripts 288 downloads