Package: Oncotree 0.3.5

Oncotree: Estimating Oncogenetic Trees

Construct and evaluate directed tree structures that model the process of occurrence of genetic alterations during carcinogenesis as described in Szabo, A. and Boucher, K (2002) <doi:10.1016/S0025-5564(02)00086-X>.

Authors:Aniko Szabo, Lisa Pappas

Oncotree_0.3.5.tar.gz
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Oncotree_0.3.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
Oncotree/json (API)

# Install 'Oncotree' in R:
install.packages('Oncotree', repos = c('https://anikoszabo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/anikoszabo/oncotree/issues

Datasets:
  • ov.cgh - Ovarian cancer CGH data

On CRAN:

Conda:

4.34 score 22 scripts 277 downloads 5 mentions 13 exports 1 dependencies

Last updated from:156fd9e2eb. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE103
source / vignettesOK164
linux-releaseNOTE90
macos-releaseNOTE92
macos-oldrelNOTE74
windows-develNOTE61
windows-releaseNOTE60
windows-oldrelNOTE68
wasm-releaseOK91

Exports:ancestorsbootstrap.oncotreedistribution.oncotreeerror.rates<-generate.dataleast.common.ancestormarginal.distroncotree.fitplot.boottreeplot.oncotreeprint.boottreeprint.oncotreepstree.oncotree

Dependencies:boot

Using Oncotree for the ovarian cancer CGH data
Rendered fromOncotree_vignette.Rnwusingutils::Sweave

Last update: 2023-09-28
Started: 2023-09-26

OncotreeIntro
Rendered fromOncotree_intro.Rnwusingutils::Sweave

Last update: 2023-09-26
Started: 2023-09-26