Package: Oncotree 0.3.5

Oncotree: Estimating Oncogenetic Trees

Construct and evaluate directed tree structures that model the process of occurrence of genetic alterations during carcinogenesis as described in Szabo, A. and Boucher, K (2002) <doi:10.1016/S0025-5564(02)00086-X>.

Authors:Aniko Szabo, Lisa Pappas

Oncotree_0.3.5.tar.gz
Oncotree_0.3.5.zip(r-4.7)Oncotree_0.3.5.zip(r-4.6)Oncotree_0.3.5.zip(r-4.5)
Oncotree_0.3.5.tgz(r-4.6-any)Oncotree_0.3.5.tgz(r-4.5-any)
Oncotree_0.3.5.tar.gz(r-4.7-any)Oncotree_0.3.5.tar.gz(r-4.6-any)
Oncotree_0.3.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
Oncotree/json (API)

# Install 'Oncotree' in R:
install.packages('Oncotree', repos = c('https://anikoszabo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/anikoszabo/oncotree/issues

Datasets:
  • ov.cgh - Ovarian cancer CGH data

On CRAN:

Conda:

4.30 score 20 scripts 245 downloads 5 mentions 13 exports 1 dependencies

Last updated from:156fd9e2eb. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE103
source / vignettesOK180
linux-release-x86_64NOTE96
macos-release-arm64NOTE88
macos-oldrel-arm64NOTE71
windows-develNOTE94
windows-releaseNOTE70
windows-oldrelNOTE63
wasm-releaseOK88

Exports:ancestorsbootstrap.oncotreedistribution.oncotreeerror.rates<-generate.dataleast.common.ancestormarginal.distroncotree.fitplot.boottreeplot.oncotreeprint.boottreeprint.oncotreepstree.oncotree

Dependencies:boot

Using Oncotree for the ovarian cancer CGH data
Rendered fromOncotree_vignette.Rnwusingutils::Sweave

Last update: 2023-09-28
Started: 2023-09-26

OncotreeIntro
Rendered fromOncotree_intro.Rnwusingutils::Sweave

Last update: 2023-09-26
Started: 2023-09-26