Package: Oncotree 0.3.5

Oncotree: Estimating Oncogenetic Trees

Construct and evaluate directed tree structures that model the process of occurrence of genetic alterations during carcinogenesis as described in Szabo, A. and Boucher, K (2002) <doi:10.1016/S0025-5564(02)00086-X>.

Authors:Aniko Szabo, Lisa Pappas

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Oncotree.pdf |Oncotree.html✨
Oncotree/json (API)

# Install 'Oncotree' in R:
install.packages('Oncotree', repos = c('https://anikoszabo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/anikoszabo/oncotree/issues

Datasets:
  • ov.cgh - Ovarian cancer CGH data

On CRAN:

Conda:

4.28 score 19 scripts 250 downloads 5 mentions 13 exports 1 dependencies

Last updated 2 years agofrom:156fd9e2eb. Checks:3 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 21 2025
R-4.5-winNOTEMar 21 2025
R-4.5-macNOTEMar 21 2025
R-4.5-linuxNOTEMar 21 2025
R-4.4-winNOTEMar 21 2025
R-4.4-macNOTEMar 21 2025
R-4.4-linuxNOTEMar 21 2025
R-4.3-winOKMar 21 2025
R-4.3-macOKMar 21 2025

Exports:ancestorsbootstrap.oncotreedistribution.oncotreeerror.rates<-generate.dataleast.common.ancestormarginal.distroncotree.fitplot.boottreeplot.oncotreeprint.boottreeprint.oncotreepstree.oncotree

Dependencies:boot

OncotreeIntro

Rendered fromOncotree_intro.Rnwusingutils::Sweaveon Mar 21 2025.

Last update: 2023-09-26
Started: 2023-09-26

Using Oncotree for the ovarian cancer CGH data

Rendered fromOncotree_vignette.Rnwusingutils::Sweaveon Mar 21 2025.

Last update: 2023-09-28
Started: 2023-09-26